daniel's blog
For movie15-based 3D embeds, how to get u3d files?
Wed, 04/08/2010 - 5:20pm | by danielI posted the following question over at tex.stackexchange but as a newbie there, I can only post one link, so I put a linked version here.
The movie15 package requires 3D files to be in u3d format for embedding into pdf. This works fine with the sample files provided, and I have no problem generating suitable 3D files, but so far, I have not found a way to convert them to u3d. MeshLab, usually the first place to go for such things, crashes during u3d export.
Re: We scare people off by talking about 'degrowth'
Wed, 14/07/2010 - 1:06pm | by danielThis is a comment on We scare people off by talking about 'degrowth' in The Ecologist — copied here for self-archiving purposes, keeping in mind that all comments previously made to the Times were recently lost when they erected their new pay wall.
Nice take on a crucial problem: If resources are limited (and they are), so is growth - how do we communicate that?
A few issues, though:
Open Science session at ESOF 2010 is set up for July 4, 15.45-17.00 in room Dublino
Sun, 04/07/2010 - 2:14am | by danielThis post is simply to announce the Eurodoc session "What would science look like if it were invented today?" at ESOF 2010, scheduled to take place in room Dublino of the Centro Congressi Linotto in Torino at 15.45-17.00 on July 4.
IAS2010: Is it hard being a scientist?
Sat, 03/07/2010 - 1:17am | by danielFrom June 14-25, an unusual event of science engagement took place online, which brought over 5000 school kids and 100 scientists together for chats and Q&A sessions on science and how life is like as a scientist: "I'm a Scientist". To get a flavour of these questions (of which over 7000 were asked in total), a few of them are displayed below (in original spelling):
Conference abstract: Large-scale web-based collaboration is key for making science sustainable in the long run
Fri, 25/06/2010 - 5:43am | by danielLast November, I submitted a conference abstract entitled "What if science were sustainable?" to the 2010 Conference of the International Society for Ecological Economics (ISEE).
I'm a Scientist and the Beryllium Fraud
Fri, 18/06/2010 - 9:33am | by daniel
Starting this week, I have been part of "I'm a Scientist — Get me out of here", a very interesting science communication experiment, in which 8000 school kids and 100 scientists meet online (in 20 different places) to discuss what science means for them, and what is important about that (I try to keep track of it here).
Slides are up - on the wiki, that is
Thu, 06/05/2010 - 3:25am | by danielLater today, I will attend the Semantic Web Day in Leipzig and give a talk on Integrating wikis with scientific workflows. Perhaps appropriate to the topic, I did not prepare slides but a set of wiki pages.
Tall-access publishers congratulate Open-access publisher PLoS to its success
Wed, 05/05/2010 - 9:23am | by danielThe title of this post misrepresents the position of the Society for Scholarly Publishing just about as much as their recent blog post did with the publishing practice, standards and goals of the Public Library of Science, and their journal PLoS ONE in particular. There may be a grain of truth in this headline, though, in that the rising heat of the debate may indeed be indicative of a tipping point coming in sight, after which toll-access (i.e. subscription-based) scientific journals would shrink into a niche in the prelude to a larger disruption of the scientific communication process, the transition to open science.
For details, please take a look at the reply that PLoS posted yesterday, and at one of the discussions that spun off the original blog post (which is linked from there). Both are embedded below.
OKCon 2010 as seen via tweets
Mon, 26/04/2010 - 12:29am | by danielIn the spirit of Another Conference I did not attend, I embed below my summary of tweets on OKCon 2010, as well as the piratepad that pleasantly fulfilled the function of collaborative note taking, for which I had proposed a wiki-based attempt yesterday. While the former is unbeatably interactive (one of the best ways to attend a conference online if no audio/video is available), I think that the latter is more suitable for long-term archiving and structuring the information about the conference and its sessions and talks. Looking forward to another Etherpad-based attempt at OpenSciNY.
Collaborative conference blogging - this time in context
Sat, 24/04/2010 - 2:22am | by danielLater today, OKCon 2010 will take place — the fifth (or fourth, depending on whether WSFII 2005 counts or not) installment of the Open Knowledge Conference, organized on an annual basis by the Open Knowledge Foundation.
I have contributed to a paper (with @Tom Morris, who will present it) that is scheduled for the Community-Driven Research session and describes Citizendium as a platform for the collaborative structuring of knowledge by experts and the public. I cannot attend in person but will do so online via Twitter and Friendfeed, and this blend of wiki and microblogging on the same topic stimulated me to give collaborative blogging another try, this time via the wiki entry on the conference, embedded below. Caveat: only registered users can edit, but everyone can register, and approval rarely takes more than a few hours. If this is too late for you to keep your OKCon 2010 notes there, then the wiki can still serve to structure them later and to contextualize them. Or it can simply link to your blog posts, images and other materials on the matter.
I am also aware that, as long as wikis do not allow parallel editing in the same sections of a document, Etherpad clones would be an alternative, and they may indeed get their try in a few weeks too.
Anyway, here we go for the wiki variant:
What could an online tool do to support your research?
Tue, 13/04/2010 - 3:06pm | by danielThe British Library are currently running what they call a ", whose last question is number 31:
I do not think that discussing this supplementary question here would spoil the survey, so I invite possible answers, irrespective of whether you filled in the survey or not. I shall post a screenshot of my answer here tomorrow.
Notes from another conference I did not attend: CPOV 2010
Sun, 28/03/2010 - 8:51am | by danielI couldn't attend CPOV 2010 in person but followed it via Twitter and took a number of screenshots, which I combined into this animation (3:10 min in total, at 0.5 frames per second). I also attached it as an animated gif at 1 frame per second but this may be just illustrative of information overflow.
Advice on filling an Open Access repository
Fri, 26/03/2010 - 12:59pm | by danielI agree that mandates and integration with the workflow of the researchers are the essential ingredients to a proper strategy.
Advice on filling your repository
1. Preface
I was moved to produce this by Hugh Glaser's remarks that no-one was prepared to offer advice to beginners or people transitioning to a properly mandated repository. This advice is not new. It has been said by many others in part, and I have been preaching it in Australia and New Zealand for at least five years. It is however firmly based on experience, and knowledge of what works and what doesn't in many universities, right around the world.
Open Humanities — imagining the future of libraries
Fri, 19/03/2010 - 10:03pm | by daniel
This blog is focused on science, simply because that is what I do most of my time. The same applies to the "What would [X] look like if it were invented today?" series of blog posts, and while it has not escaped my notice that X=Humanities would be a possible configuration, I did not feel particularly competent to write that part, nor did my infrequent calls for people from the humanities or social sciences to participate in the open science debates here or at Friendfeed result in much feedback from that end. However, I came across a piece recently (and read it today) that has a great potential to fill this gap (a case for UU, as discussed yesterday). It was written in a very personal and engaging style by Lisbet Rausing for a printed magazine (The New Republic), so its major drawback is that it has no hyperlinks and that the only non-text element is this image of a traditional library of paper documents. But the text was explicitly placed in the Public Domain, such that it can be adapted for the web, for which I have set up a document anyone can edit — please feel free to do so, and to tell your colleagues and friends in the humanities and social sciences about it.
For stimulation, I paste in below Lisbet Rausing's original of March 12, 2010 at 12:00 am, entitled "Toward a New Alexandria". The text (which should not be changed, though corrections may be added) is well worth a second read even in this non-enhanced form, and I will leave it to you to judge whether a more webby version can add value to that.
"My blog is carbon neutral" initiative
Thu, 18/03/2010 - 12:22pm | by danielI have no precise idea what the environmental footprint of this blog is but I just saw mention here of a blog with about 15000 visits producing about 3.5kg of CO2 per month and that there is an initiative dedicated to raising awareness on the issue and to planting trees in order to alleviate some of the impact. More on the initiative via the Friendfeed group dedicated to it:
